EnhancerDB
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  3. rs558043284[chr16:88340641]
Enhancers that have rs558043284[chr16:88340641]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88327201 88357367 enh16902
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Uterus
chr16 88340379 88340720 vista23489
VISTA
Transcript factors that have rs558043284[chr16:88340641]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221908
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221909
chr16 88337983 88340927 ZNF143 GTRD no Epithelial (MCF-7) 108221910
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221932
chr16 88338138 88343321 ZNF143 GTRD no Epithelial (MCF-7) 108221933
chr16 88339563 88343230 TCF7L2 GTRD no Colon (HCT116) 108221946
chr16 88339610 88341034 TCF7L2 GTRD no Colon (HCT116) 108221947
chr16 88339881 88341423 ZNF274 GTRD no Bone Marrow (K562) 108221948
chr16 88339899 88341285 ZNF274 GTRD no Bone Marrow (K562) 108221949
chr16 88340010 88341991 ZNF143 GTRD no Epithelial (MCF-7) 108221951
chr16 88340397 88340673 CEBPB UCSC Txn Factor no Conserved 108221955
chr16 88340421 88343363 TCF7L2 GTRD no Colon (HCT116) 108221956
chr16 88340455 88341013 TCF7L2 GTRD no Colon (HCT116) 108221957
chr16 88340458 88341137 TCF7L2 GTRD no Colon (HCT116) 108221958
chr16 88340525 88340781 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21735992
chr16 88340525 88340781 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108221959
chr16 88340527 88340971 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21735993
chr16 88340527 88340971 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108221960
chr16 88340527 88341128 TCF7L2 GTRD no Colon (HCT116) 108221961
chr16 88340535 88340911 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108221962
chr16 88340624 88340641 BCL6B JASPAR yes 12276432
chr16 88340624 88340641 BCL6B JASPAR yes 49417083
chr16 88340625 88340644 RFX2 JASPAR yes 12276433
chr16 88340625 88340644 RFX2 JASPAR yes 49417084
chr16 88340627 88340642 RFX5 JASPAR yes 12276435
chr16 88340627 88340642 RFX5 JASPAR yes 49417086
chr16 88340640 88340651 FOXH1 JASPAR yes 12276436
chr16 88340640 88340651 FOXH1 JASPAR yes 49417087
chr16 88340641 88340645 H1TF2 TRANSFAC yes 12276437
chr16 88340641 88340645 NFE TRANSFAC yes 12276438
chr16 88340641 88340645 SRF TRANSFAC yes 12276439
chr16 88340641 88340645 H1TF2 TRANSFAC yes 49417088
chr16 88340641 88340645 NFE TRANSFAC yes 49417089
chr16 88340641 88340645 SRF TRANSFAC yes 49417090
Genes associated with rs558043284[chr16:88340641], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More