EnhancerDB
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  3. rs55820615[chr12:50969174]
Enhancers that have rs55820615[chr12:50969174]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50954380 50971535 enh2347
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Epithelial (MCF-7) Stomach Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs55820615[chr12:50969174]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50969157 50969177 RREB1 JASPAR yes 120846198
chr12 50969158 50969179 IRF1 JASPAR yes 120846199
chr12 50969159 50969174 FOXP1 JASPAR yes 120846201
chr12 50969162 50969174 IRF1 JASPAR yes 120846202
chr12 50969162 50969182 RREB1 JASPAR yes 120846203
chr12 50969163 50969184 IRF1 JASPAR yes 120846204
chr12 50969164 50969179 FOXP1 JASPAR yes 120846206
chr12 50969165 50969180 STAT2 JASPAR yes 120846207
chr12 50969167 50969179 IRF1 JASPAR yes 120846208
chr12 50969169 50969175 TCF4 TRANSFAC yes 120846209
chr12 50969169 50969184 FOXP1 JASPAR yes 120846210
chr12 50969170 50969181 FOXP2 JASPAR yes 120846211
chr12 50969170 50969182 FOXC2 JASPAR yes 120846212
Genes associated with rs55820615[chr12:50969174], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More