EnhancerDB
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  3. rs558247268[chr2:38923580]
Enhancers that have rs558247268[chr2:38923580]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs558247268[chr2:38923580]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38923559 38923580 IRF1 JASPAR yes 73165981
chr2 38923560 38923581 IRF1 JASPAR yes 73165982
chr2 38923564 38923585 IRF1 JASPAR yes 73165983
chr2 38923565 38923580 FOXP1 JASPAR yes 73165984
chr2 38923565 38923586 IRF1 JASPAR yes 73165985
chr2 38923569 38923590 IRF1 JASPAR yes 73165986
chr2 38923570 38923585 FOXP1 JASPAR yes 73165987
chr2 38923570 38923591 IRF1 JASPAR yes 73165988
chr2 38923571 38923592 IRF1 JASPAR yes 73165989
chr2 38923572 38923587 FOXP1 JASPAR yes 73165990
chr2 38923572 38923593 IRF1 JASPAR yes 73165991
chr2 38923574 38923589 FOXP1 JASPAR yes 73165992
chr2 38923575 38923590 FOXP1 JASPAR yes 73165993
chr2 38923576 38923591 FOXP1 JASPAR yes 73165994
chr2 38923577 38923592 FOXP1 JASPAR yes 73165995
chr2 38923578 38923593 FOXP1 JASPAR yes 73165996
chr2 38923579 38923594 FOXP1 JASPAR yes 73165997
chr2 38923580 38923595 FOXP1 JASPAR yes 73165998
Genes associated with rs558247268[chr2:38923580], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More