EnhancerDB
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  3. rs558478465[chr1:19275516]
Enhancers that have rs558478465[chr1:19275516]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs558478465[chr1:19275516]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19275506 19275518 TFAP2A JASPAR yes 27165060
chr1 19275506 19275518 TFAP2B JASPAR yes 27165061
chr1 19275506 19275518 TFAP2C JASPAR yes 27165062
chr1 19275506 19275521 TFAP2A JASPAR yes 27165063
chr1 19275506 19275521 TFAP2C JASPAR yes 27165064
chr1 19275507 19275516 TFAP2A JASPAR yes 27165065
chr1 19275507 19275518 EBF1 JASPAR yes 27165066
chr1 19275508 19275517 TFAP2A JASPAR yes 27165067
chr1 19275512 19275517 SP1 TRANSFAC yes 27165068
Genes associated with rs558478465[chr1:19275516], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More