EnhancerDB
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  3. rs558539388[chr16:29268920]
Enhancers that have rs558539388[chr16:29268920]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 29265834 29287135 enh31760
Astrocyte Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs558539388[chr16:29268920]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 29268061 29268925 ZNF274 GTRD no Cervix (HeLa-S3) 21701939
chr16 29268379 29268948 ZNF274 GTRD no Liver (HepG2) 21701948
chr16 29268446 29270076 ZNF274 GTRD no Cervix (HeLa-S3) 21701949
chr16 29268525 29269892 ZBTB33 GTRD no Brain (SK-N-SH) 21701952
chr16 29268545 29269285 ZNF274 GTRD no Liver (HepG2) 21701953
chr16 29268609 29269886 ZBTB33 GTRD no Brain (SK-N-SH) 21701954
chr16 29268617 29269871 ZBTB33 GTRD no Brain (SK-N-SH) 21701955
chr16 29268618 29269244 ZNF274 GTRD no Cervix (HeLa-S3) 21701956
chr16 29268660 29268920 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21701957
chr16 29268671 29268941 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21701958
chr16 29268672 29269897 ZNF274 GTRD no Cervix (HeLa-S3) 21701959
chr16 29268678 29269694 ZNF274 GTRD no Cervix (HeLa-S3) 21701960
chr16 29268685 29269202 ZNF274 GTRD no Cervix (HeLa-S3) 21701961
chr16 29268688 29269372 ZNF274 GTRD no Cervix (HeLa-S3) 21701962
chr16 29268689 29268939 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21701963
chr16 29268694 29268924 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21701964
chr16 29268697 29269816 ZBTB33 GTRD no Brain (SK-N-SH) 21701965
chr16 29268708 29269701 ZBTB33 GTRD no Brain (SK-N-SH) 21701966
chr16 29268712 29268942 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21701967
chr16 29268721 29268940 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21701968
chr16 29268722 29269789 ZBTB33 GTRD no Brain (SK-N-SH) 21701969
chr16 29268730 29269836 ZBTB33 GTRD no Brain (SK-N-SH) 21701970
chr16 29268740 29269176 ZNF274 GTRD no Cervix (HeLa-S3) 21701971
chr16 29268767 29269127 ZNF274 GTRD no Liver (HepG2) 21701973
chr16 29268774 29269871 ZBTB33 GTRD no Brain (SK-N-SH) 21701974
chr16 29268775 29269294 ZNF274 GTRD no Cervix (HeLa-S3) 21701975
chr16 29268780 29269881 ZBTB33 GTRD no Brain (SK-N-SH) 21701976
chr16 29268790 29269111 ZNF274 GTRD no Cervix (HeLa-S3) 21701977
chr16 29268798 29269027 ZNF274 GTRD no Liver (HepG2) 21701978
chr16 29268814 29269570 ZBTB33 GTRD no Brain (SK-N-SH) 21701979
chr16 29268817 29269848 ZBTB33 GTRD no Brain (SK-N-SH) 21701980
chr16 29268825 29269813 ZBTB33 GTRD no Brain (SK-N-SH) 21701981
chr16 29268827 29269765 ZBTB33 GTRD no Brain (SK-N-SH) 21701982
chr16 29268899 29269231 ZNF274 GTRD no Cervix (HeLa-S3) 21701983
chr16 29268911 29268924 NFKB2 JASPAR yes 10254577
chr16 29268916 29269971 ZBTB33 GTRD no Brain (SK-N-SH) 21701984
chr16 29268917 29268929 INSM1 JASPAR yes 10254578
chr16 29268917 29268934 RARA JASPAR yes 10254579
Genes associated with rs558539388[chr16:29268920], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More