EnhancerDB
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  3. rs558559438[chr1:211516933]
Enhancers that have rs558559438[chr1:211516933]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 211498150 211519175 enh904
Cervix (HeLa-S3) Large Intestine Blood (T-cell) Esophagus Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas Muscle (Myotube) Thymus Epithelial (MCF-7)
Transcript factors that have rs558559438[chr1:211516933]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 211513300 211518875 ZNF274 GTRD no Cervix (HeLa-S3) 21375813
chr1 211513300 211518875 ZNF274 GTRD no Cervix (HeLa-S3) 107867208
chr1 211513553 211517648 ZNF274 GTRD no Cervix (HeLa-S3) 21375814
chr1 211513553 211517648 ZNF274 GTRD no Cervix (HeLa-S3) 107867209
chr1 211516354 211517532 ZNF274 GTRD no Blood (GM12878) 21375815
chr1 211516354 211517532 ZNF274 GTRD no Blood (GM12878) 107867210
chr1 211516376 211517596 ZNF274 GTRD no Blood (GM12878) 21375816
chr1 211516376 211517596 ZNF274 GTRD no Blood (GM12878) 107867211
chr1 211516493 211517527 ZNF274 GTRD no Cervix (HeLa-S3) 21375817
chr1 211516493 211517527 ZNF274 GTRD no Cervix (HeLa-S3) 107867212
chr1 211516623 211517643 ZNF274 GTRD no Bone Marrow (K562) 107867213
chr1 211516623 211517744 ZNF274 GTRD no Bone Marrow (K562) 107867214
chr1 211516904 211517514 ZNF143 GTRD no Epithelial (MCF-7) 21375818
chr1 211516904 211517514 ZNF143 GTRD no Epithelial (MCF-7) 107867215
chr1 211516919 211516938 REST JASPAR yes 35054979
chr1 211516928 211517678 ZNF143 GTRD no Epithelial (MCF-7) 21375819
chr1 211516928 211517678 ZNF143 GTRD no Epithelial (MCF-7) 107867216
chr1 211516930 211516947 ESR1 JASPAR yes 35054980
chr1 211516930 211516948 ESR2 JASPAR yes 35054981
chr1 211516930 211517575 TCF7L2 GTRD no Colon (HCT116) 107867217
Genes associated with rs558559438[chr1:211516933], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More