EnhancerDB
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  3. rs55883854[chr2:28929541]
Enhancers that have rs55883854[chr2:28929541]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 28928585 28946675 enh18396
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs55883854[chr2:28929541]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 28929529 28929543 POU4F1 JASPAR yes 72671561
chr2 28929533 28929547 ONECUT1 JASPAR yes 72671580
chr2 28929533 28929547 ONECUT2 JASPAR yes 72671581
chr2 28929533 28929547 ONECUT3 JASPAR yes 72671582
chr2 28929535 28929544 VENTX JASPAR yes 72671583
chr2 28929535 28929549 ONECUT1 JASPAR yes 72671584
chr2 28929535 28929549 ONECUT2 JASPAR yes 72671585
chr2 28929536 28929546 CUX1 JASPAR yes 72671586
chr2 28929536 28929546 CUX2 JASPAR yes 72671587
chr2 28929536 28929546 PAX3 JASPAR yes 72671588
chr2 28929536 28929546 PAX7 JASPAR yes 72671589
chr2 28929538 28929547 VENTX JASPAR yes 72671590
Genes associated with rs55883854[chr2:28929541], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More