EnhancerDB
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  3. rs558970525[chr12:52540206]
Enhancers that have rs558970525[chr12:52540206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs558970525[chr12:52540206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 21546353
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033092
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033093
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033122
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033123
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033124
chr12 52539379 52542818 POLR2A UCSC Txn Factor no Conserved 108033125
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546373
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033126
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033127
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033128
chr12 52539433 52542587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033129
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 21546376
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033132
chr12 52539668 52540941 TCF7L2 GTRD no Colon (HCT116) 108033133
chr12 52539693 52540373 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546377
chr12 52539693 52540373 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033134
chr12 52539693 52540373 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033135
chr12 52539818 52540227 TCF7L2 GTRD no Colon (HCT116) 21546378
chr12 52539959 52540492 ZNF274 GTRD no Bone Marrow (K562) 108033136
chr12 52540016 52540480 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21546379
chr12 52540016 52540480 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108033137
chr12 52540082 52540364 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21546380
chr12 52540082 52540364 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108033138
chr12 52540197 52540214 RARA JASPAR yes 120921714
chr12 52540197 52540214 RXRA JASPAR yes 120921715
Genes associated with rs558970525[chr12:52540206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More