EnhancerDB
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  3. rs559055792[chr12:52534021]
Enhancers that have rs559055792[chr12:52534021]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs559055792[chr12:52534021]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52533611 52534406 ZNF143 GTRD no Epithelial (MCF-7) 21546292
chr12 52534001 52534021 TP63 JASPAR yes 120920864
chr12 52534007 52534023 ZNF143 JASPAR yes 120920867
chr12 52534012 52534031 PAX5 JASPAR yes 120920868
chr12 52534015 52534024 HIC2 JASPAR yes 120920869
Genes associated with rs559055792[chr12:52534021], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More