EnhancerDB
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  3. rs559380802[chr1:54810573]
Enhancers that have rs559380802[chr1:54810573]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54786534 54810675 enh369
Brain (SK-N-SH) Prostate (RWPE1) Stomach Muscle (A673) Uterus Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Heart
Transcript factors that have rs559380802[chr1:54810573]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54809173 54810948 TCF7L2 GTRD no Colon (HCT116) 107804806
chr1 54809897 54811429 ZNF274 GTRD no Bone Marrow (K562) 107804807
chr1 54809897 54811447 ZNF274 GTRD no Bone Marrow (K562) 107804808
chr1 54809945 54811337 ZNF274 GTRD no Cervix (HeLa-S3) 107804809
chr1 54810032 54811232 ZNF274 GTRD no Bone Marrow (K562) 107804810
chr1 54810036 54810960 TCF7L2 GTRD no Colon (HCT116) 107804811
chr1 54810044 54811244 ZBTB33 GTRD no Lung (A549) 107804812
chr1 54810056 54811350 ZNF143 GTRD no Epithelial (MCF-7) 107804813
chr1 54810066 54811236 ZBTB33 GTRD no Lung (A549) 107804814
chr1 54810084 54810890 ZNF143 GTRD no Epithelial (MCF-7) 107804815
chr1 54810121 54811378 ZNF143 GTRD no Epithelial (MCF-7) 107804816
chr1 54810135 54811256 ZNF274 GTRD no Cervix (HeLa-S3) 107804817
chr1 54810138 54811308 ZNF143 GTRD no Epithelial (MCF-7) 107804818
chr1 54810141 54810942 ZNF274 GTRD no Liver (HepG2) 107804819
chr1 54810160 54811050 ZNF274 GTRD no Blood (GM12878) 107804820
chr1 54810186 54811060 ZNF274 GTRD no Blood (GM12878) 107804821
chr1 54810190 54811644 ZBTB33 GTRD no Lung (A549) 107804822
chr1 54810202 54811008 ZNF143 GTRD no Epithelial (MCF-7) 107804823
chr1 54810206 54811050 ZNF274 GTRD no Blood (GM12878) 107804824
chr1 54810209 54811093 ZNF274 GTRD no Blood (GM12878) 107804825
chr1 54810221 54810852 ZNF274 GTRD no Blood (GM12878) 107804826
chr1 54810221 54811102 ZNF274 GTRD no Blood (GM12878) 107804827
chr1 54810222 54811086 ZNF274 GTRD no Liver (HepG2) 107804828
chr1 54810224 54810947 ZBTB33 GTRD no Lung (A549) 107804829
chr1 54810227 54810991 ZNF274 GTRD no Blood (GM12878) 107804830
chr1 54810238 54810982 ZNF274 GTRD no Bone Marrow (K562) 107804831
chr1 54810249 54811067 ZNF274 GTRD no Bone Marrow (K562) 107804832
chr1 54810254 54811074 ZNF274 GTRD no Blood (GM12878) 107804833
chr1 54810254 54811112 ZNF143 GTRD no Epithelial (MCF-7) 107804834
chr1 54810261 54810991 ZNF274 GTRD no Liver (HepG2) 107804835
chr1 54810274 54811079 ZNF274 GTRD no Liver (HepG2) 107804836
chr1 54810280 54811018 ZNF274 GTRD no Cervix (HeLa-S3) 107804837
chr1 54810282 54811221 ZNF274 GTRD no Blood (GM12878) 107804838
chr1 54810283 54811078 ZBTB33 GTRD no Lung (A549) 107804839
chr1 54810291 54810988 ZNF274 GTRD no Liver (HepG2) 107804840
chr1 54810291 54811019 ZNF143 GTRD no Epithelial (MCF-7) 107804841
chr1 54810291 54811074 ZBTB33 GTRD no Lung (A549) 107804842
chr1 54810292 54811218 ZNF143 GTRD no Epithelial (MCF-7) 107804843
chr1 54810295 54811173 ZNF274 GTRD no Bone Marrow (K562) 107804844
chr1 54810303 54810978 CTCF GTRD no Spleen 107804845
chr1 54810314 54810989 ZNF274 GTRD no Blood (GM12878) 107804846
chr1 54810329 54810861 CTCF GTRD no Lung 107804847
chr1 54810335 54810926 ZBTB33 GTRD no Lung (A549) 107804848
chr1 54810339 54810918 ZNF274 GTRD no Liver (HepG2) 107804849
chr1 54810340 54811035 ZBTB33 GTRD no Lung (A549) 107804850
chr1 54810342 54810953 ZNF274 GTRD no Cervix (HeLa-S3) 107804851
chr1 54810343 54811232 ZNF143 GTRD no Epithelial (MCF-7) 107804852
chr1 54810346 54810917 ZNF274 GTRD no Blood (GM12878) 107804853
chr1 54810350 54810821 ZNF274 GTRD no Blood (GM12878) 107804854
chr1 54810355 54811272 ZNF274 GTRD no Bone Marrow (K562) 107804855
chr1 54810361 54811024 ZNF274 GTRD no Bone Marrow (K562) 107804856
chr1 54810362 54810808 ZNF143 GTRD no Epithelial (MCF-7) 107804857
chr1 54810368 54810907 ZBTB33 GTRD no Lung (A549) 107804858
chr1 54810369 54810892 ZNF143 GTRD no Epithelial (MCF-7) 107804859
chr1 54810370 54810897 ZBTB33 GTRD no Lung (A549) 107804860
chr1 54810370 54810957 ZNF274 GTRD no Blood (GM12878) 107804861
chr1 54810371 54811504 ZNF143 GTRD no Epithelial (MCF-7) 107804862
chr1 54810372 54811073 TCF7L2 GTRD no Colon (HCT116) 107804863
chr1 54810375 54810927 ZNF274 GTRD no Liver (HepG2) 107804864
chr1 54810376 54810906 TCF7L2 GTRD no Colon (HCT116) 107804865
chr1 54810384 54810904 ZNF274 GTRD no Blood (GM12878) 107804866
chr1 54810384 54810960 ZNF274 GTRD no Bone Marrow (K562) 107804867
chr1 54810386 54811185 ZNF274 GTRD no Bone Marrow (K562) 107804868
chr1 54810387 54811086 ZNF143 GTRD no Epithelial (MCF-7) 107804869
chr1 54810388 54810903 ZNF274 GTRD no Blood (GM12878) 107804870
chr1 54810398 54810926 ZNF274 GTRD no Blood (GM12878) 107804871
chr1 54810398 54811089 ZNF274 GTRD no Cervix (HeLa-S3) 107804872
chr1 54810399 54810966 ZBTB33 GTRD no Lung (A549) 107804873
chr1 54810402 54810872 ZNF274 GTRD no Blood (GM12878) 107804874
chr1 54810402 54810896 ZNF274 GTRD no Liver (HepG2) 107804875
chr1 54810411 54811031 ZNF274 GTRD no Blood (GM12878) 107804876
chr1 54810414 54811151 ZNF274 GTRD no Liver (HepG2) 107804877
chr1 54810418 54810844 ZNF274 GTRD no Liver (HepG2) 107804878
chr1 54810418 54811128 ZNF274 GTRD no Liver (HepG2) 107804879
chr1 54810421 54810929 ZNF274 GTRD no Blood (GM12878) 107804880
chr1 54810423 54810937 ZNF274 GTRD no Blood (GM12878) 107804881
chr1 54810423 54811092 ZNF143 GTRD no Epithelial (MCF-7) 107804882
chr1 54810424 54810932 ZNF274 GTRD no Bone Marrow (K562) 107804883
chr1 54810424 54811145 ZNF143 GTRD no Epithelial (MCF-7) 107804884
chr1 54810430 54810820 ZNF274 GTRD no Cervix (HeLa-S3) 107804885
chr1 54810431 54810940 ZNF274 GTRD no Cervix (HeLa-S3) 107804886
chr1 54810434 54810936 ZNF274 GTRD no Bone Marrow (K562) 107804887
chr1 54810435 54810818 ZNF274 GTRD no Bone Marrow (K562) 107804888
chr1 54810439 54810917 ZBTB33 GTRD no Lung (A549) 107804889
chr1 54810439 54810975 ZBTB33 GTRD no Lung (A549) 107804890
chr1 54810449 54810861 ZNF274 GTRD no Cervix (HeLa-S3) 107804891
chr1 54810451 54810793 ZNF274 GTRD no Blood (GM12878) 107804892
chr1 54810451 54811180 ZNF274 GTRD no Bone Marrow (K562) 107804893
chr1 54810454 54810880 CTCF GTRD no Kidney 107804894
chr1 54810456 54810876 ZNF274 GTRD no Blood (GM12878) 107804895
chr1 54810465 54810759 ZBTB33 GTRD no Lung (A549) 107804896
chr1 54810486 54810796 ZNF274 GTRD no Liver (HepG2) 107804897
chr1 54810505 54810844 ZNF274 GTRD no Bone Marrow (K562) 107804898
chr1 54810541 54810872 ZNF274 GTRD no Blood (GM12878) 107804899
chr1 54810548 54810835 ZNF274 GTRD no Bone Marrow (K562) 107804900
chr1 54810571 54810584 SMAD2 JASPAR yes 28975963
Genes associated with rs559380802[chr1:54810573], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More