EnhancerDB
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  3. rs559662196[chr1:209595878]
Enhancers that have rs559662196[chr1:209595878]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs559662196[chr1:209595878]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209595707 209596266 TCF7L2 GTRD no Colon (HCT116) 21375410
chr1 209595866 209595886 TP63 JASPAR yes 34974591
chr1 209595867 209595885 TP73 JASPAR yes 34974592
chr1 209595868 209595883 TP53 JASPAR yes 34974593
chr1 209595870 209595881 FOXA1 JASPAR yes 34974594
chr1 209595870 209595885 FOXA1 JASPAR yes 34974595
chr1 209595875 209595895 RREB1 JASPAR yes 34974596
chr1 209595876 209595882 HiNF-A TRANSFAC yes 34974597
Genes associated with rs559662196[chr1:209595878], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More