EnhancerDB
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  3. rs55988537[chr1:16517091]
Enhancers that have rs55988537[chr1:16517091]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs55988537[chr1:16517091]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16517071 16517091 RREB1 JASPAR yes 27033708
chr1 16517076 16517096 RREB1 JASPAR yes 27033711
chr1 16517079 16517099 RREB1 JASPAR yes 27033712
chr1 16517085 16517106 IRF1 JASPAR yes 27033714
chr1 16517086 16517101 FOXP1 JASPAR yes 27033715
chr1 16517086 16517107 IRF1 JASPAR yes 27033716
chr1 16517088 16517103 FOXP1 JASPAR yes 27033717
chr1 16517090 16517105 FOXP1 JASPAR yes 27033718
chr1 16517091 16517106 FOXP1 JASPAR yes 27033719
Genes associated with rs55988537[chr1:16517091], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More