EnhancerDB
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  3. rs559892017[chr2:26227139]
Enhancers that have rs559892017[chr2:26227139]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 26217845 26245475 enh18363
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs559892017[chr2:26227139]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 26227127 26227140 DUXA JASPAR yes 72515403
chr2 26227128 26227139 DUX4 JASPAR yes 72515404
chr2 26227128 26227139 PHOX2A JASPAR yes 72515405
chr2 26227128 26227139 PROP1 JASPAR yes 72515406
chr2 26227131 26227141 ALX3 JASPAR yes 72515407
chr2 26227131 26227141 GSX2 JASPAR yes 72515408
chr2 26227131 26227141 MIXL1 JASPAR yes 72515409
chr2 26227131 26227141 MNX1 JASPAR yes 72515410
chr2 26227132 26227140 ISX JASPAR yes 72515411
chr2 26227132 26227140 LMX1A JASPAR yes 72515412
chr2 26227132 26227140 LMX1B JASPAR yes 72515413
chr2 26227132 26227140 NKX6-1 JASPAR yes 72515414
chr2 26227132 26227140 NKX6-2 JASPAR yes 72515415
chr2 26227132 26227140 PRRX1 JASPAR yes 72515416
chr2 26227132 26227140 RAX2 JASPAR yes 72515417
chr2 26227132 26227140 SHOX JASPAR yes 72515418
chr2 26227132 26227140 UNCX JASPAR yes 72515419
chr2 26227132 26227140 VAX1 JASPAR yes 72515420
chr2 26227132 26227145 DUXA JASPAR yes 72515421
chr2 26227133 26227144 DUX4 JASPAR yes 72515422
chr2 26227133 26227144 PHOX2A JASPAR yes 72515423
chr2 26227133 26227144 PROP1 JASPAR yes 72515424
chr2 26227135 26227150 HNF1A JASPAR yes 72515425
chr2 26227136 26227149 HNF1B JASPAR yes 72515426
chr2 26227136 26227150 POU4F1 JASPAR yes 72515427
chr2 26227136 26227152 POU4F3 JASPAR yes 72515428
chr2 26227137 26227148 PHOX2A JASPAR yes 72515429
chr2 26227137 26227148 PROP1 JASPAR yes 72515430
Genes associated with rs559892017[chr2:26227139], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More