EnhancerDB
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  3. rs560055246[chr17:57454342]
Enhancers that have rs560055246[chr17:57454342]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57433402 57461748 enh17258
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs560055246[chr17:57454342]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57450367 57455459 ZNF143 GTRD no Epithelial (MCF-7) 21774854
chr17 57450367 57455459 ZNF143 GTRD no Epithelial (MCF-7) 108275926
chr17 57454321 57454342 IRF1 JASPAR yes 55054530
chr17 57454331 57454352 IRF1 JASPAR yes 55054537
chr17 57454335 57454350 PRDM1 JASPAR yes 55054539
chr17 57454335 57454356 IRF1 JASPAR yes 55054540
chr17 57454336 57454357 IRF1 JASPAR yes 55054541
chr17 57454340 57454354 STAT1 JASPAR yes 55054542
chr17 57454340 57454355 PRDM1 JASPAR yes 55054543
chr17 57454340 57454355 STAT2 JASPAR yes 55054544
Genes associated with rs560055246[chr17:57454342], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More