EnhancerDB
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  3. rs560342259[chr1:223914027]
Enhancers that have rs560342259[chr1:223914027]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs560342259[chr1:223914027]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223914021 223914036 TFAP2C JASPAR yes 35673154
chr1 223914022 223914033 TFAP2A JASPAR yes 35673155
chr1 223914022 223914033 TFAP2B JASPAR yes 35673156
chr1 223914022 223914034 TFAP2A JASPAR yes 35673157
chr1 223914022 223914034 TFAP2B JASPAR yes 35673158
chr1 223914022 223914034 TFAP2C JASPAR yes 35673159
chr1 223914023 223914032 TFAP2A JASPAR yes 35673160
chr1 223914024 223914680 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107873113
chr1 223914027 223914037 SP1 JASPAR yes 35673161
Genes associated with rs560342259[chr1:223914027], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More