EnhancerDB
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  3. rs560366685[chr12:122239287]
Enhancers that have rs560366685[chr12:122239287]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122219767 122240055 enh2650
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs560366685[chr12:122239287]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122229445 122242257 POLR2A UCSC Txn Factor no Conserved 108065674
chr12 122239274 122239289 TFAP2A JASPAR yes 124248412
chr12 122239276 122239289 TFAP2A JASPAR yes 124248413
chr12 122239276 122239289 TFAP2B JASPAR yes 124248414
chr12 122239276 122239289 TFAP2C JASPAR yes 124248415
chr12 122239276 122239291 TFAP2C JASPAR yes 124248416
chr12 122239277 122239288 EBF1 JASPAR yes 124248417
chr12 122239284 122239288 LFA1 TRANSFAC yes 124248418
Genes associated with rs560366685[chr12:122239287], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More