EnhancerDB
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  3. rs560598741[chr5:149173553]
Enhancers that have rs560598741[chr5:149173553]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 149167853 149192675 enh8796
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs560598741[chr5:149173553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 149173543 149173553 HOXA13 JASPAR yes 66845650
chr5 149173543 149173553 HOXB13 JASPAR yes 66845651
chr5 149173543 149173553 HOXD13 JASPAR yes 66845652
chr5 149173543 149173554 HOXA10 JASPAR yes 66845653
chr5 149173544 149173553 CDX1 JASPAR yes 66845654
chr5 149173544 149173555 CDX2 JASPAR yes 66845655
chr5 149173549 149173563 TLX1 JASPAR yes 66845656
chr5 149173550 149173564 TLX1 JASPAR yes 66845657
Genes associated with rs560598741[chr5:149173553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More