EnhancerDB
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  3. rs560805816[chr17:25854241]
Enhancers that have rs560805816[chr17:25854241]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25838865 25883455 enh17064
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs560805816[chr17:25854241]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25854227 25854243 SOX4 JASPAR yes 53641197
chr17 25854228 25854243 SOX21 JASPAR yes 53641199
chr17 25854228 25854244 SOX4 JASPAR yes 53641200
chr17 25854230 25854241 PROP1 JASPAR yes 53641201
chr17 25854235 25854244 SOX9 JASPAR yes 53641202
chr17 25854237 25854246 SRY JASPAR yes 53641203
chr17 25854238 25854251 POU2F2 JASPAR yes 53641204
chr17 25854238 25854252 POU1F1 JASPAR yes 53641205
Genes associated with rs560805816[chr17:25854241], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More