EnhancerDB
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  3. rs560946239[chr1:28735651]
Enhancers that have rs560946239[chr1:28735651]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28732865 28757735 enh186
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs560946239[chr1:28735651]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28735630 28735651 IRF1 JASPAR yes 27767026
chr1 28735631 28735652 IRF1 JASPAR yes 27767027
chr1 28735636 28735651 FOXP1 JASPAR yes 27767031
chr1 28735637 28735652 FOXP1 JASPAR yes 27767032
chr1 28735638 28735653 FOXP1 JASPAR yes 27767033
chr1 28735646 28735656 NFATC3 JASPAR yes 27767034
chr1 28735647 28735654 NFATC2 JASPAR yes 27767035
Genes associated with rs560946239[chr1:28735651], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More