EnhancerDB
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  3. rs561276578[chr1:205259553]
Enhancers that have rs561276578[chr1:205259553]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205243649 205259635 enh893
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Heart
Transcript factors that have rs561276578[chr1:205259553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205257531 205259590 ZNF274 GTRD no Bone Marrow (K562) 21371598
chr1 205257531 205259590 ZNF274 GTRD no Bone Marrow (K562) 107861584
chr1 205258290 205260432 ZNF274 GTRD no Cervix (HeLa-S3) 21371611
chr1 205258290 205260432 ZNF274 GTRD no Cervix (HeLa-S3) 21371612
chr1 205258565 205259890 ZNF274 GTRD no Bone Marrow (K562) 21371620
chr1 205259155 205259705 ZNF274 GTRD no Blood (GM12878) 21371633
chr1 205259173 205260639 ZNF274 GTRD no Bone Marrow (K562) 21371634
chr1 205259182 205259609 ZNF274 GTRD no Blood (GM12878) 21371635
chr1 205259209 205259582 ZNF274 GTRD no Blood (GM12878) 21371636
chr1 205259220 205259667 ZNF274 GTRD no Bone Marrow (K562) 21371638
chr1 205259241 205260593 ZNF143 GTRD no Epithelial (MCF-7) 21371639
chr1 205259294 205259967 ZNF143 GTRD no Epithelial (MCF-7) 21371640
chr1 205259326 205259648 ZNF274 GTRD no Blood (GM12878) 21371641
chr1 205259418 205259917 ZNF143 GTRD no Epithelial (MCF-7) 21371642
chr1 205259475 205260368 TCF7L2 GTRD no Colon (HCT116) 21371643
chr1 205259500 205260571 ZNF143 GTRD no Epithelial (MCF-7) 21371644
chr1 205259506 205260746 ZNF143 GTRD no Epithelial (MCF-7) 21371645
chr1 205259508 205259959 ZNF143 GTRD no Epithelial (MCF-7) 21371646
chr1 205259527 205260635 ZNF143 GTRD no Epithelial (MCF-7) 21371647
chr1 205259545 205259557 YY1 JASPAR yes 34752135
Genes associated with rs561276578[chr1:205259553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More