EnhancerDB
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  3. rs561377478[chr1:225941427]
Enhancers that have rs561377478[chr1:225941427]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs561377478[chr1:225941427]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225940873 225942011 SOX2 GTRD no Neural Stem Cells (H9) 21385731
chr1 225940942 225941463 SOX2 GTRD no Neural Stem Cells (H9) 21385732
chr1 225940949 225941587 SOX2 GTRD no Neural Stem Cells (H9) 21385733
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225941073 225941975 SOX2 GTRD no Neural Stem Cells (H9) 21385735
chr1 225941087 225941489 SOX2 GTRD no Neural Stem Cells (H9) 21385736
chr1 225941167 225941500 SOX2 GTRD no Neural Stem Cells (H9) 21385737
chr1 225941291 225941573 SOX2 GTRD no Neural Stem Cells (H9) 21385739
Genes associated with rs561377478[chr1:225941427], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More