EnhancerDB
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  3. rs561916562[chr1:178619710]
Enhancers that have rs561916562[chr1:178619710]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178606845 178636895 enh759
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Large Intestine Ovary Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs561916562[chr1:178619710]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178619545 178619813 ZNF143 GTRD no Epithelial (MCF-7) 21352789
chr1 178619699 178619714 SCRT1 JASPAR yes 33433544
chr1 178619703 178619712 SNAI2 JASPAR yes 33433545
chr1 178619703 178619713 ID4 JASPAR yes 33433546
chr1 178619703 178619713 TCF3 JASPAR yes 33433547
chr1 178619703 178619713 TCF4 JASPAR yes 33433548
chr1 178619705 178619714 ZEB1 JASPAR yes 33433549
Genes associated with rs561916562[chr1:178619710], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More