EnhancerDB
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  3. rs562080363[chr1:27926977]
Enhancers that have rs562080363[chr1:27926977]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27879543 27929405 enh11668
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Lung Muscle (A673) Heart
chr1 27926949 27927449 vista936
VISTA
Transcript factors that have rs562080363[chr1:27926977]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27925913 27927142 TCF7L2 GTRD no Colon (HCT116) 107802601
chr1 27926964 27926984 RREB1 JASPAR yes 27714816
chr1 27926964 27926984 RREB1 JASPAR yes 118259001
chr1 27926967 27926982 RUNX2 JASPAR yes 27714817
chr1 27926967 27926982 RUNX2 JASPAR yes 118259002
chr1 27926968 27926983 MEF2C JASPAR yes 27714818
chr1 27926968 27926983 MEF2C JASPAR yes 118259003
chr1 27926968 27926988 RREB1 JASPAR yes 27714819
chr1 27926968 27926988 RREB1 JASPAR yes 118259004
chr1 27926968 27926989 IRF1 JASPAR yes 27714820
chr1 27926968 27926989 IRF1 JASPAR yes 118259005
chr1 27926969 27926989 RREB1 JASPAR yes 27714821
chr1 27926969 27926989 RREB1 JASPAR yes 118259006
chr1 27926969 27926990 IRF1 JASPAR yes 27714822
chr1 27926969 27926990 IRF1 JASPAR yes 118259007
chr1 27926970 27926991 IRF1 JASPAR yes 27714823
chr1 27926970 27926991 IRF1 JASPAR yes 118259008
chr1 27926971 27926986 FOXP1 JASPAR yes 27714824
chr1 27926971 27926986 FOXP1 JASPAR yes 118259009
chr1 27926973 27926988 FOXP1 JASPAR yes 27714825
chr1 27926973 27926988 FOXP1 JASPAR yes 118259010
chr1 27926974 27926989 STAT2 JASPAR yes 27714826
chr1 27926974 27926989 STAT2 JASPAR yes 118259011
chr1 27926975 27926990 FOXP1 JASPAR yes 27714827
chr1 27926975 27926990 FOXP1 JASPAR yes 118259012
chr1 27926975 27926996 IRF1 JASPAR yes 27714828
chr1 27926975 27926996 IRF1 JASPAR yes 118259013
chr1 27926976 27926997 IRF1 JASPAR yes 27714829
chr1 27926976 27926997 IRF1 JASPAR yes 118259014
chr1 27926977 27926989 FOXC2 JASPAR yes 27714830
chr1 27926977 27926989 FOXC2 JASPAR yes 118259015
Genes associated with rs562080363[chr1:27926977], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More