EnhancerDB
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  3. rs562116742[chr1:201428968]
Enhancers that have rs562116742[chr1:201428968]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs562116742[chr1:201428968]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201428739 201429255 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21364082
chr1 201428955 201428969 JUN JASPAR yes 34496124
chr1 201428958 201428975 PAX1 JASPAR yes 34496125
chr1 201428968 201428981 NFKB1 JASPAR yes 34496126
chr1 201428968 201428981 NFKB2 JASPAR yes 34496127
Genes associated with rs562116742[chr1:201428968], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More