EnhancerDB
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  3. rs562123673[chr5:172175001]
Enhancers that have rs562123673[chr5:172175001]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172156284 172181075 enh22815
Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562123673[chr5:172175001]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172174986 172175002 POU4F3 JASPAR yes 67821802
chr5 172174990 172175006 POU4F2 JASPAR yes 67821803
chr5 172174990 172175006 POU4F3 JASPAR yes 67821804
chr5 172174991 172175001 PAX3 JASPAR yes 67821805
chr5 172174991 172175001 PAX7 JASPAR yes 67821806
chr5 172174992 172175006 POU4F1 JASPAR yes 67821807
chr5 172174992 172175007 HNF1A JASPAR yes 67821808
chr5 172174993 172175003 LHX6 JASPAR yes 67821809
chr5 172174993 172175003 MNX1 JASPAR yes 67821810
chr5 172174993 172175003 POU6F1 JASPAR yes 67821811
chr5 172174993 172175006 HNF1B JASPAR yes 67821812
chr5 172174993 172175007 POU4F1 JASPAR yes 67821813
chr5 172174994 172175002 LMX1A JASPAR yes 67821814
chr5 172174994 172175002 LMX1B JASPAR yes 67821815
chr5 172174994 172175002 NKX6-1 JASPAR yes 67821816
chr5 172174994 172175002 NKX6-2 JASPAR yes 67821817
chr5 172174994 172175002 VAX1 JASPAR yes 67821818
chr5 172174994 172175002 VAX2 JASPAR yes 67821819
chr5 172174994 172175002 VSX1 JASPAR yes 67821820
chr5 172174994 172175002 VSX2 JASPAR yes 67821821
chr5 172174997 172175009 POU2F1 JASPAR yes 67821822
chr5 172174999 172175003 YY1 TRANSFAC yes 67821823
chr5 172174999 172175008 POU5F1B JASPAR yes 67821824
Genes associated with rs562123673[chr5:172175001], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More