EnhancerDB
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  3. rs562140540[chr6:12348050]
Enhancers that have rs562140540[chr6:12348050]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 12340945 12361575 enh38802
Astrocyte Colon (HCT116) Pancreas Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs562140540[chr6:12348050]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 12348032 12348053 IRF1 JASPAR yes 99963937
chr6 12348034 12348055 IRF1 JASPAR yes 99963939
chr6 12348035 12348050 FOXP1 JASPAR yes 99963940
chr6 12348036 12348051 STAT2 JASPAR yes 99963941
chr6 12348036 12348057 IRF1 JASPAR yes 99963942
chr6 12348037 12348052 FOXP1 JASPAR yes 99963943
chr6 12348038 12348059 IRF1 JASPAR yes 99963944
chr6 12348042 12348057 PRDM1 JASPAR yes 99963945
chr6 12348042 12348063 IRF1 JASPAR yes 99963946
chr6 12348043 12348064 ZNF263 JASPAR yes 99963947
chr6 12348044 12348065 IRF1 JASPAR yes 99963948
chr6 12348045 12348066 ZNF263 JASPAR yes 99963949
chr6 12348046 12348061 PRDM1 JASPAR yes 99963950
chr6 12348047 12348068 ZNF263 JASPAR yes 99963951
chr6 12348048 12348063 PRDM1 JASPAR yes 99963952
chr6 12348050 12348065 PRDM1 JASPAR yes 99963953
Genes associated with rs562140540[chr6:12348050], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More