EnhancerDB
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  3. rs562253954[chr17:38776738]
Enhancers that have rs562253954[chr17:38776738]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38750565 38781175 enh17142
Brain (SK-N-MC) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs562253954[chr17:38776738]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38776149 38776745 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21756784
chr17 38776149 38776745 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108257745
chr17 38776275 38776865 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21756795
chr17 38776275 38776865 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108257779
chr17 38776391 38776761 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21756802
chr17 38776391 38776761 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108257791
chr17 38776400 38776780 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21756803
chr17 38776400 38776780 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108257792
chr17 38776732 38776747 FOXP1 JASPAR yes 54233242
chr17 38776732 38776753 IRF1 JASPAR yes 54233243
chr17 38776733 38776748 FOXP1 JASPAR yes 54233244
Genes associated with rs562253954[chr17:38776738], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More