EnhancerDB
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  3. rs562342722[chr1:209590230]
Enhancers that have rs562342722[chr1:209590230]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 209590107 209590333 vista4901
VISTA
Transcript factors that have rs562342722[chr1:209590230]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209590059 209591032 ZBTB33 GTRD no Lung (A549) 21375373
chr1 209590059 209591032 ZBTB33 GTRD no Lung (A549) 107865768
chr1 209590088 209591055 AR GTRD no Prostate (PC-3) 21375374
chr1 209590088 209591055 AR GTRD no Prostate (PC-3) 107865769
chr1 209590145 209591011 ZNF143 GTRD no Epithelial (MCF-7) 21375375
chr1 209590145 209591011 ZNF143 GTRD no Epithelial (MCF-7) 107865770
chr1 209590175 209591049 ZNF274 GTRD no Bone Marrow (K562) 107865771
chr1 209590192 209591140 ZNF143 GTRD no Epithelial (MCF-7) 21375376
chr1 209590192 209591140 ZNF143 GTRD no Epithelial (MCF-7) 107865772
chr1 209590197 209590905 ZBTB33 GTRD no Lung (A549) 21375377
chr1 209590197 209590905 ZBTB33 GTRD no Lung (A549) 107865773
chr1 209590197 209591077 ZBTB33 GTRD no Lung (A549) 21375378
chr1 209590197 209591077 ZBTB33 GTRD no Lung (A549) 107865774
chr1 209590207 209590847 ZBTB33 GTRD no Lung (A549) 21375379
chr1 209590207 209590847 ZBTB33 GTRD no Lung (A549) 107865775
Genes associated with rs562342722[chr1:209590230], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More