EnhancerDB
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  3. rs562568965[chr1:178612232]
Enhancers that have rs562568965[chr1:178612232]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178606845 178636895 enh759
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Large Intestine Ovary Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs562568965[chr1:178612232]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178612225 178612243 IRF2 JASPAR yes 33432215
chr1 178612226 178612247 IRF1 JASPAR yes 33432216
chr1 178612228 178612243 STAT2 JASPAR yes 33432217
chr1 178612229 178612243 STAT1 JASPAR yes 33432218
chr1 178612230 178612242 IRF1 JASPAR yes 33432219
chr1 178612230 178612245 IRF9 JASPAR yes 33432220
chr1 178612231 178612252 IRF1 JASPAR yes 33432221
chr1 178612232 178612238 TCF4 TRANSFAC yes 33432222
chr1 178612232 178612247 FOXP1 JASPAR yes 33432223
Genes associated with rs562568965[chr1:178612232], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More