EnhancerDB
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  3. rs562574704[chr17:39062930]
Enhancers that have rs562574704[chr17:39062930]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39055145 39077753 enh17145
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs562574704[chr17:39062930]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39062557 39063588 TEF1 GTRD no Bone (Osteoblast) 21757172
chr17 39062848 39063172 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21757173
chr17 39062920 39062935 RUNX2 JASPAR yes 54242628
chr17 39062922 39062937 RFX5 JASPAR yes 54242629
chr17 39062929 39063211 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21757174
Genes associated with rs562574704[chr17:39062930], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More