EnhancerDB
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  3. rs56259586[chr12:52534219]
Enhancers that have rs56259586[chr12:52534219]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs56259586[chr12:52534219]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52533611 52534406 ZNF143 GTRD no Epithelial (MCF-7) 21546292
chr12 52534104 52534977 ZNF143 GTRD no Epithelial (MCF-7) 21546293
chr12 52534184 52535257 ZNF274 GTRD no Cervix (HeLa-S3) 21546294
chr12 52534210 52534225 TFAP2A JASPAR yes 120920903
chr12 52534210 52534225 TFAP2C JASPAR yes 120920904
chr12 52534213 52534225 TFAP2A JASPAR yes 120920905
chr12 52534213 52534225 TFAP2B JASPAR yes 120920906
chr12 52534213 52534225 TFAP2C JASPAR yes 120920907
chr12 52534217 52534232 HNF4G JASPAR yes 120920908
chr12 52534217 52534232 NR2C2 JASPAR yes 120920909
chr12 52534218 52534233 HNF4A JASPAR yes 120920910
Genes associated with rs56259586[chr12:52534219], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More