EnhancerDB
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  3. rs56265946[chr17:43444133]
Enhancers that have rs56265946[chr17:43444133]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 43440002 43455235 enh17189
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Ovary Astrocyte Bone (Osteoblast) Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs56265946[chr17:43444133]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 43443631 43445284 P63 GTRD no Skin (Keratinocyte) 21765509
chr17 43443665 43444901 P63 GTRD no Skin (Keratinocyte) 21765510
chr17 43443808 43444917 P63 GTRD no Skin (Keratinocyte) 21765511
chr17 43443839 43444910 P63 GTRD no Skin (Keratinocyte) 21765512
chr17 43443849 43445674 ZNF274 GTRD no Cervix (HeLa-S3) 21765513
chr17 43443878 43444342 SOX2 GTRD no Neural Stem Cells (H9) 21765514
chr17 43443912 43444281 SOX2 GTRD no Neural Stem Cells (H9) 21765515
chr17 43443940 43444399 SOX2 GTRD no Neural Stem Cells (H9) 21765516
chr17 43443975 43444566 SOX2 GTRD no Neural Stem Cells (H9) 21765517
chr17 43444122 43444137 TFAP2A JASPAR yes 54449038
chr17 43444123 43444134 TFAP2A JASPAR yes 54449039
chr17 43444123 43444134 TFAP2B JASPAR yes 54449040
chr17 43444123 43444134 TFAP2C JASPAR yes 54449041
chr17 43444132 43444143 EBF1 JASPAR yes 54449042
Genes associated with rs56265946[chr17:43444133], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 42982376 42994305 - GFAP ENSG00000131095.7 42994305 449828 Ovary 0.469362 15939