EnhancerDB
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  3. rs56340905[chr17:29920288]
Enhancers that have rs56340905[chr17:29920288]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 29918764 29929790 enh17097
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Liver Bone (Osteoblast) Lung (A549) Stomach Placenta Pancreas (Panc1) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs56340905[chr17:29920288]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 29920281 29920294 SMAD2 JASPAR yes 53848746
chr17 29920284 29920294 TBR1 JASPAR yes 53848747
chr17 29920285 29920295 TBX21 JASPAR yes 53848748
chr17 29920286 29920294 MGA JASPAR yes 53848749
chr17 29920286 29920294 TBX15 JASPAR yes 53848750
chr17 29920286 29920294 TBX1 JASPAR yes 53848751
chr17 29920286 29920294 TBX4 JASPAR yes 53848752
chr17 29920286 29920294 TBX5 JASPAR yes 53848753
chr17 29920286 29920295 ZEB1 JASPAR yes 53848754
chr17 29920286 29920299 ZBTB18 JASPAR yes 53848755
chr17 29920287 29920297 FIGLA JASPAR yes 53848756
chr17 29920287 29920297 ID4 JASPAR yes 53848757
chr17 29920287 29920297 TCF3 JASPAR yes 53848758
chr17 29920287 29920297 TCF4 JASPAR yes 53848759
Genes associated with rs56340905[chr17:29920288], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More