EnhancerDB
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  3. rs563844541[chr1:54824459]
Enhancers that have rs563844541[chr1:54824459]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54820685 54854719 enh11867
Bone Marrow (K562) Liver Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Blood (GM12878) Placenta Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs563844541[chr1:54824459]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54824448 54824461 NFKB2 JASPAR yes 28977275
chr1 54824449 54824459 NFKB1 JASPAR yes 28977276
chr1 54824449 54824459 RELA JASPAR yes 28977277
chr1 54824449 54824459 REL JASPAR yes 28977278
chr1 54824449 54824460 NFKB1 JASPAR yes 28977279
chr1 54824450 54824460 RELA JASPAR yes 28977280
chr1 54824450 54824460 REL JASPAR yes 28977281
chr1 54824457 54824462 SP1 TRANSFAC yes 28977282
Genes associated with rs563844541[chr1:54824459], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More