EnhancerDB
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  3. rs564260532[chr1:21589048]
Enhancers that have rs564260532[chr1:21589048]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 21585105 21605175 enh26575
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Liver (HepG2) Prostate (RWPE1) Heart
chr1 21588829 21589430 vista663
VISTA
Transcript factors that have rs564260532[chr1:21589048]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 21325274
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 107802345
chr1 21586237 21589119 TCF7L2 GTRD no Colon (HCT116) 107802346
chr1 21589045 21589050 TFAP2A TRANSFAC yes 27288259
chr1 21589045 21589050 TFAP2A TRANSFAC yes 118245527
chr1 21589045 21589051 MZF1 JASPAR yes 27288260
chr1 21589045 21589051 MZF1 JASPAR yes 118245528
chr1 21589047 21589052 ETS2 TRANSFAC yes 27288261
chr1 21589047 21589052 ETS2 TRANSFAC yes 118245529
Genes associated with rs564260532[chr1:21589048], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More