EnhancerDB
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Enhancers that have rs565267345[chr12:52539323]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52531174 52553795 enh2357
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Heart
chr12 52539319 52539712 vista13443
VISTA
Transcript factors that have rs565267345[chr12:52539323]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52538139 52539820 ZBTB33 GTRD no Lung (A549) 108033090
chr12 52538170 52539881 ZBTB33 GTRD no Lung (A549) 108033091
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 21546353
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033092
chr12 52538502 52540289 ZNF143 GTRD no Epithelial (MCF-7) 108033093
chr12 52538565 52539638 ZNF143 GTRD no Epithelial (MCF-7) 21546354
chr12 52538565 52539638 ZNF143 GTRD no Epithelial (MCF-7) 108033094
chr12 52538583 52539717 ZBTB33 GTRD no Lung (A549) 108033095
chr12 52538625 52539767 ZNF143 GTRD no Epithelial (MCF-7) 21546355
chr12 52538625 52539767 ZNF143 GTRD no Epithelial (MCF-7) 108033096
chr12 52538696 52539540 ZNF143 GTRD no Epithelial (MCF-7) 21546356
chr12 52538696 52539540 ZNF143 GTRD no Epithelial (MCF-7) 108033097
chr12 52538740 52539765 ZNF143 GTRD no Epithelial (MCF-7) 21546357
chr12 52538740 52539765 ZNF143 GTRD no Epithelial (MCF-7) 108033098
chr12 52538745 52539611 ZBTB33 GTRD no Lung (A549) 108033099
chr12 52538787 52539651 ZBTB33 GTRD no Lung (A549) 108033100
chr12 52538810 52539709 ZBTB33 GTRD no Lung (A549) 108033101
chr12 52538829 52539562 ZNF143 GTRD no Epithelial (MCF-7) 21546358
chr12 52538829 52539562 ZNF143 GTRD no Epithelial (MCF-7) 108033102
chr12 52538834 52539692 ZBTB33 GTRD no Lung (A549) 108033103
chr12 52538851 52539707 ZNF274 GTRD no Cervix (HeLa-S3) 21546359
chr12 52538851 52539707 ZNF274 GTRD no Cervix (HeLa-S3) 108033104
chr12 52538853 52539587 ZNF143 GTRD no Epithelial (MCF-7) 21546360
chr12 52538853 52539587 ZNF143 GTRD no Epithelial (MCF-7) 108033105
chr12 52538853 52539599 ZNF143 GTRD no Epithelial (MCF-7) 21546361
chr12 52538853 52539599 ZNF143 GTRD no Epithelial (MCF-7) 108033106
chr12 52538864 52539619 ZBTB33 GTRD no Lung (A549) 108033107
chr12 52538886 52539580 ZNF274 GTRD no Cervix (HeLa-S3) 21546362
chr12 52538886 52539580 ZNF274 GTRD no Cervix (HeLa-S3) 108033108
chr12 52538924 52539704 ZBTB33 GTRD no Lung (A549) 108033109
chr12 52538946 52539521 ZNF143 GTRD no Epithelial (MCF-7) 21546363
chr12 52538946 52539521 ZNF143 GTRD no Epithelial (MCF-7) 108033110
chr12 52538981 52539866 ZNF143 GTRD no Epithelial (MCF-7) 21546364
chr12 52538981 52539866 ZNF143 GTRD no Epithelial (MCF-7) 108033111
chr12 52538990 52539563 ZNF143 GTRD no Epithelial (MCF-7) 21546365
chr12 52538990 52539563 ZNF143 GTRD no Epithelial (MCF-7) 108033112
chr12 52538992 52539343 ZNF143 GTRD no Epithelial (MCF-7) 21546366
chr12 52538992 52539343 ZNF143 GTRD no Epithelial (MCF-7) 108033113
chr12 52538995 52539484 ZNF274 GTRD no Cervix (HeLa-S3) 21546367
chr12 52538995 52539484 ZNF274 GTRD no Cervix (HeLa-S3) 108033114
chr12 52539001 52539881 ZBTB33 GTRD no Lung (A549) 108033115
chr12 52539023 52539578 ZNF274 GTRD no Cervix (HeLa-S3) 21546368
chr12 52539023 52539578 ZNF274 GTRD no Cervix (HeLa-S3) 108033116
chr12 52539032 52539613 ZNF274 GTRD no Cervix (HeLa-S3) 21546369
chr12 52539032 52539613 ZNF274 GTRD no Cervix (HeLa-S3) 108033117
chr12 52539067 52539396 ZBTB33 GTRD no Lung (A549) 108033118
chr12 52539072 52539408 ZNF274 GTRD no Cervix (HeLa-S3) 21546370
chr12 52539072 52539408 ZNF274 GTRD no Cervix (HeLa-S3) 108033119
chr12 52539077 52539412 TCF7L2 GTRD no Colon (HCT116) 21546371
chr12 52539077 52539412 TCF7L2 GTRD no Colon (HCT116) 108033120
chr12 52539320 52539334 PLAG1 JASPAR yes 82405520
chr12 52539320 52539334 PLAG1 JASPAR yes 120921579
Genes associated with rs565267345[chr12:52539323], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More