EnhancerDB
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  3. rs565593094[chr1:225941560]
Enhancers that have rs565593094[chr1:225941560]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs565593094[chr1:225941560]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225940873 225942011 SOX2 GTRD no Neural Stem Cells (H9) 21385731
chr1 225940949 225941587 SOX2 GTRD no Neural Stem Cells (H9) 21385733
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225941073 225941975 SOX2 GTRD no Neural Stem Cells (H9) 21385735
chr1 225941291 225941573 SOX2 GTRD no Neural Stem Cells (H9) 21385739
chr1 225941511 225942151 ZNF274 GTRD no Liver (HepG2) 21385740
chr1 225941550 225942166 ZNF274 GTRD no Liver (HepG2) 21385741
chr1 225941553 225941572 REST JASPAR yes 35767465
chr1 225941556 225942124 ZNF274 GTRD no Cervix (HeLa-S3) 21385742
Genes associated with rs565593094[chr1:225941560], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More