EnhancerDB
  1. Home
  2. SNP
  3. rs565727425[chr2:28879602]
Enhancers that have rs565727425[chr2:28879602]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 28854725 28893200 enh18394
Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs565727425[chr2:28879602]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 28879590 28879603 NFKB1 JASPAR yes 72665217
chr2 28879590 28879603 NFKB2 JASPAR yes 72665218
chr2 28879593 28879604 CEBPB JASPAR yes 72665219
chr2 28879596 28879617 REST JASPAR yes 72665220
Genes associated with rs565727425[chr2:28879602], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More