EnhancerDB
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  3. rs566212597[chr5:179188130]
Enhancers that have rs566212597[chr5:179188130]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 179185005 179195695 enh8908
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Blood (T-cell) Brain (SK-N-SH) Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Thyroid Peripheral Blood (MM.1S) Uterus Blood (Karpas-422) Lung (PC-9) Breast Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs566212597[chr5:179188130]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 179188123 179188136 SMAD2 JASPAR yes 68188229
chr5 179188126 179188136 TBR1 JASPAR yes 68188230
chr5 179188127 179188137 TBX21 JASPAR yes 68188231
chr5 179188128 179188136 MGA JASPAR yes 68188232
chr5 179188128 179188136 TBX15 JASPAR yes 68188233
chr5 179188128 179188136 TBX1 JASPAR yes 68188234
chr5 179188128 179188136 TBX4 JASPAR yes 68188235
chr5 179188128 179188136 TBX5 JASPAR yes 68188236
chr5 179188128 179188137 ZEB1 JASPAR yes 68188237
chr5 179188128 179188140 PKNOX1 JASPAR yes 68188238
chr5 179188128 179188140 TGIF1 JASPAR yes 68188239
chr5 179188128 179188141 ZBTB18 JASPAR yes 68188240
chr5 179188129 179188139 FIGLA JASPAR yes 68188241
chr5 179188129 179188139 ID4 JASPAR yes 68188242
chr5 179188129 179188139 TCF3 JASPAR yes 68188243
chr5 179188129 179188139 TCF4 JASPAR yes 68188244
chr5 179188130 179188139 SNAI2 JASPAR yes 68188245
Genes associated with rs566212597[chr5:179188130], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More