EnhancerDB
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  3. rs566520114[chr1:204254603]
Enhancers that have rs566520114[chr1:204254603]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204245511 204275535 enh12577
Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs566520114[chr1:204254603]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 21370352
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859792
chr1 204253317 204256076 ZNF143 GTRD no Epithelial (MCF-7) 107859793
chr1 204253650 204255004 ZNF274 GTRD no Liver (HepG2) 21370353
chr1 204253650 204255004 ZNF274 GTRD no Liver (HepG2) 107859794
chr1 204253704 204255221 AR GTRD no Prostate (PC-3) 21370354
chr1 204253704 204255221 AR GTRD no Prostate (PC-3) 107859795
chr1 204253875 204255030 TEF1 GTRD no Bone (Osteoblast) 21370355
chr1 204253875 204255030 TEF1 GTRD no Bone (Osteoblast) 107859796
chr1 204253876 204255019 ZNF143 GTRD no Epithelial (MCF-7) 21370356
chr1 204253876 204255019 ZNF143 GTRD no Epithelial (MCF-7) 107859797
chr1 204254584 204254604 RREB1 JASPAR yes 34688162
chr1 204254585 204254605 RREB1 JASPAR yes 34688163
chr1 204254589 204254609 RREB1 JASPAR yes 34688165
chr1 204254595 204254615 RREB1 JASPAR yes 34688166
chr1 204254595 204254616 IRF1 JASPAR yes 34688167
chr1 204254596 204254617 IRF1 JASPAR yes 34688168
chr1 204254600 204254612 IRF1 JASPAR yes 34688169
chr1 204254600 204254614 IRF7 JASPAR yes 34688170
chr1 204254601 204254621 RREB1 JASPAR yes 34688171
chr1 204254601 204254622 IRF1 JASPAR yes 34688172
chr1 204254602 204254608 TCF4 TRANSFAC yes 34688173
chr1 204254602 204254617 FOXP1 JASPAR yes 34688174
chr1 204254602 204254623 IRF1 JASPAR yes 34688175
chr1 204254603 204254618 STAT2 JASPAR yes 34688176
Genes associated with rs566520114[chr1:204254603], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More