EnhancerDB
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  3. rs566628669[chr17:55443086]
Enhancers that have rs566628669[chr17:55443086]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55440094 55459475 enh17241
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs566628669[chr17:55443086]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55442218 55448102 ZNF274 GTRD no Liver (HepG2) 21773412
chr17 55442218 55448102 ZNF274 GTRD no Liver (HepG2) 108273843
chr17 55442320 55447389 ZNF274 GTRD no Liver (HepG2) 21773413
chr17 55442320 55447389 ZNF274 GTRD no Liver (HepG2) 108273844
chr17 55442573 55447451 ZNF274 GTRD no Liver (HepG2) 21773414
chr17 55442573 55447451 ZNF274 GTRD no Liver (HepG2) 108273845
chr17 55442617 55447556 ZNF274 GTRD no Liver (HepG2) 21773415
chr17 55442617 55447556 ZNF274 GTRD no Liver (HepG2) 108273846
chr17 55443077 55443091 TLX1 JASPAR yes 54946630
chr17 55443081 55443096 FOXP1 JASPAR yes 54946631
chr17 55443082 55443093 FOXA1 JASPAR yes 54946632
chr17 55443082 55443097 FOXA1 JASPAR yes 54946633
Genes associated with rs566628669[chr17:55443086], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More