EnhancerDB
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  3. rs56861489[chr12:50930357]
Enhancers that have rs56861489[chr12:50930357]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs56861489[chr12:50930357]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50930346 50930367 IRF1 JASPAR yes 120840090
chr12 50930347 50930362 FOXP1 JASPAR yes 120840091
chr12 50930348 50930363 STAT2 JASPAR yes 120840092
chr12 50930350 50930362 IRF1 JASPAR yes 120840093
chr12 50930352 50930358 TCF4 TRANSFAC yes 120840094
chr12 50930352 50930367 FOXP1 JASPAR yes 120840095
chr12 50930353 50930364 FOXP2 JASPAR yes 120840096
chr12 50930353 50930365 FOXC2 JASPAR yes 120840097
chr12 50930353 50930368 STAT2 JASPAR yes 120840098
chr12 50930354 50930369 FOXP1 JASPAR yes 120840099
Genes associated with rs56861489[chr12:50930357], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More