EnhancerDB
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  3. rs572800676[chr1:203483408]
Enhancers that have rs572800676[chr1:203483408]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs572800676[chr1:203483408]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203482802 203484325 ZNF143 GTRD no Epithelial (MCF-7) 21369119
chr1 203482808 203484275 ZNF143 GTRD no Epithelial (MCF-7) 21369120
chr1 203482960 203483492 TCF7L2 GTRD no Colon (HCT116) 21369121
chr1 203483059 203483609 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369122
chr1 203483125 203483984 ZNF143 GTRD no Epithelial (MCF-7) 21369123
chr1 203483158 203483534 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369124
chr1 203483170 203483526 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21369125
chr1 203483196 203484004 TCF7L2 GTRD no Colon (HCT116) 21369126
chr1 203483214 203483670 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369127
chr1 203483266 203483570 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369128
chr1 203483310 203483680 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369129
chr1 203483361 203483757 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369130
chr1 203483389 203483410 ZNF263 JASPAR yes 34634110
chr1 203483395 203483416 ZNF263 JASPAR yes 34634112
chr1 203483400 203483410 SP1 JASPAR yes 34634114
chr1 203483405 203483426 IRF1 JASPAR yes 34634115
chr1 203483407 203483422 PRDM1 JASPAR yes 34634116
chr1 203483408 203483421 SMAD2 JASPAR yes 34634117
Genes associated with rs572800676[chr1:203483408], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More