EnhancerDB
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  3. rs574988827[chr17:1901349]
Enhancers that have rs574988827[chr17:1901349]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 1888491 1923135 enh16929
Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs574988827[chr17:1901349]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 1901338 1901353 TFAP2C JASPAR yes 52714713
chr17 1901341 1901352 TFAP2A JASPAR yes 52714716
chr17 1901341 1901352 TFAP2B JASPAR yes 52714717
chr17 1901341 1901352 TFAP2C JASPAR yes 52714718
chr17 1901341 1901353 TFAP2A JASPAR yes 52714719
chr17 1901341 1901353 TFAP2B JASPAR yes 52714720
chr17 1901341 1901353 TFAP2C JASPAR yes 52714721
chr17 1901342 1901351 TFAP2A JASPAR yes 52714722
Genes associated with rs574988827[chr17:1901349], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More