EnhancerDB
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  3. rs575289222[chr17:57447591]
Enhancers that have rs575289222[chr17:57447591]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57433402 57461748 enh17258
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Lung Muscle (A673) Heart
Transcript factors that have rs575289222[chr17:57447591]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57442286 57448063 ZNF143 GTRD no Epithelial (MCF-7) 21774780
chr17 57442286 57448063 ZNF143 GTRD no Epithelial (MCF-7) 108275817
chr17 57442286 57448063 ZNF143 GTRD no Epithelial (MCF-7) 108275818
chr17 57443070 57450073 ZNF143 GTRD no Epithelial (MCF-7) 21774797
chr17 57443070 57450073 ZNF143 GTRD no Epithelial (MCF-7) 108275852
chr17 57443070 57450073 ZNF143 GTRD no Epithelial (MCF-7) 108275853
chr17 57447575 57447594 PAX5 JASPAR yes 55053510
Genes associated with rs575289222[chr17:57447591], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 58227297 58248260 + CA4 ENSG00000167434.5 58227297 779706 Esophagus 0.0243801 16112