EnhancerDB
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  3. rs575890005[chr12:125173605]
Enhancers that have rs575890005[chr12:125173605]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125156845 125176489 enh15094
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs575890005[chr12:125173605]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125172987 125173702 TCF7L2 GTRD no Colon (HCT116) 21581734
chr12 125173097 125173616 ZNF143 GTRD no Epithelial (MCF-7) 21581737
chr12 125173161 125173740 TCF7L2 GTRD no Colon (HCT116) 21581740
chr12 125173599 125173614 MEF2C JASPAR yes 124409073
chr12 125173602 125173617 FOXP1 JASPAR yes 124409074
chr12 125173603 125173618 FOXP1 JASPAR yes 124409075
chr12 125173604 125173619 FOXP1 JASPAR yes 124409076
chr12 125173604 125173625 IRF1 JASPAR yes 124409077
chr12 125173605 125173620 FOXP1 JASPAR yes 124409078
chr12 125173605 125173626 IRF1 JASPAR yes 124409079
Genes associated with rs575890005[chr12:125173605], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More