EnhancerDB
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  3. rs577009879[chr19:2551027]
Enhancers that have rs577009879[chr19:2551027]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs577009879[chr19:2551027]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 21837099
chr19 2549894 2551536 TCF7L2 GTRD no Colon (HCT116) 108362410
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 21837100
chr19 2550042 2551338 TCF7L2 GTRD no Colon (HCT116) 108362411
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 21837101
chr19 2550074 2551502 TCF7L2 GTRD no Colon (HCT116) 108362412
chr19 2551012 2551032 PPARG JASPAR yes 112073455
chr19 2551026 2551035 PITX3 JASPAR yes 112073456
chr19 2551026 2551036 GSC2 JASPAR yes 112073457
chr19 2551026 2551036 GSC JASPAR yes 112073458
chr19 2551027 2551035 OTX1 JASPAR yes 112073459
Genes associated with rs577009879[chr19:2551027], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More