EnhancerDB
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  3. rs577400927[chr12:65020305]
Enhancers that have rs577400927[chr12:65020305]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65008245 65038815 enh2404
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs577400927[chr12:65020305]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 21552884
chr12 65019971 65020350 SOX2 GTRD no Neural Stem Cells (H9) 108041893
chr12 65020284 65020305 IRF1 JASPAR yes 121417626
chr12 65020286 65020307 IRF1 JASPAR yes 121417628
chr12 65020294 65020309 HNF1A JASPAR yes 121417629
chr12 65020295 65020308 HNF1B JASPAR yes 121417630
chr12 65020298 65020314 SOX8 JASPAR yes 121417631
chr12 65020304 65020307 MYB TRANSFAC yes 121417632
Genes associated with rs577400927[chr12:65020305], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More