EnhancerDB
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Enhancers that have rs577494228[chr17:59399307]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs577494228[chr17:59399307]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 21777324
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 108279396
chr17 59399287 59399307 RREB1 JASPAR yes 55148126
chr17 59399291 59399311 RREB1 JASPAR yes 55148128
chr17 59399293 59399308 FOXA1 JASPAR yes 55148129
chr17 59399294 59399309 FOXP1 JASPAR yes 55148131
chr17 59399295 59399307 FOXC2 JASPAR yes 55148132
chr17 59399297 59399308 FOXA1 JASPAR yes 55148133
chr17 59399298 59399313 FOXP1 JASPAR yes 55148134
chr17 59399299 59399310 FOXP2 JASPAR yes 55148135
chr17 59399299 59399311 FOXC2 JASPAR yes 55148136
Genes associated with rs577494228[chr17:59399307], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More