EnhancerDB
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  3. rs577522909[chr1:16500319]
Enhancers that have rs577522909[chr1:16500319]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16486025 16524255 enh11545
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs577522909[chr1:16500319]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16500300 16500320 TP63 JASPAR yes 27031133
chr1 16500300 16500320 TP63 JASPAR yes 118238856
chr1 16500308 16500320 PKNOX1 JASPAR yes 27031134
chr1 16500308 16500320 PKNOX2 JASPAR yes 27031135
chr1 16500308 16500320 PKNOX1 JASPAR yes 118238857
chr1 16500308 16500320 PKNOX2 JASPAR yes 118238858
chr1 16500309 16500319 HEY2 JASPAR yes 27031136
chr1 16500309 16500319 ID4 JASPAR yes 27031137
chr1 16500309 16500319 TCF3 JASPAR yes 27031138
chr1 16500309 16500319 TCF4 JASPAR yes 27031139
chr1 16500309 16500319 HEY2 JASPAR yes 118238859
chr1 16500309 16500319 ID4 JASPAR yes 118238860
chr1 16500309 16500319 TCF3 JASPAR yes 118238861
chr1 16500309 16500319 TCF4 JASPAR yes 118238862
chr1 16500310 16500319 SNAI2 JASPAR yes 27031140
Genes associated with rs577522909[chr1:16500319], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More